FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25496113
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA7343902.8803998476159878No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC2699801.0589065086117244No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG1892760.742371984309922No Hit
GGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACG1754790.6882578532657115No Hit
AGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAA1689770.6627559267563649No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC1685710.6611635271619638No Hit
CGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCG1566910.614568189276538No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA1310160.5138665646798789No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG1043950.4094545705849358No Hit
CCACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAA1012900.3972762436376086No Hit
GGGAGAAGAACGATCATCAATGGCTGACGGCAGTTACAGCCAAGCAACGC718450.28178805137865526No Hit
CATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGCTT689100.2702764927344023No Hit
AGAAGAACGATCATCAATGGCTGACGGCAGTTACAGCCAAGCAACGCCAG683500.26808007950074586No Hit
GAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGC648140.25421129879680093No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC606350.23782056504063973No Hit
GAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAG576410.22607759857355508No Hit
CGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGG479940.18824045845733428No Hit
GAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAAA472840.185455720250377No Hit
GAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCA466080.18280433570403457No Hit
ATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGC442470.17354410062427947No Hit
GCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGCTTCACGCTCA428220.16795501337792157No Hit
CCTGCATGGTTTGTCTCCCCAGTCATTGTCCACAGGACTCTGGGAAGCTG427840.167805971051352No Hit
GGGGAGAAGAACGATCATCAATGGCTGACGGCAGTTACAGCCAAGCAACG393020.1541489873377954No Hit
CGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAA378390.14841085776486793No Hit
AGAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAA358670.14067634544920632No Hit
TGCATGGTTTGTCTCCCCAGTCATTGTCCACAGGACTCTGGGAAGCTGTA354320.1389702030266339No Hit
CTGCATGGTTTGTCTCCCCAGTCATTGTCCACAGGACTCTGGGAAGCTGT338430.13273788047613375No Hit
ATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGCTTC331490.13001589693299523No Hit
AGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACGCC329200.1291177208070893No Hit
CTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGCTTCACGCTCAG324550.1272939133898567No Hit
GGAGAAGAACGATCATCAATGGCTGACGGCAGTTACAGCCAAGCAACGCC324300.1271958592276399No Hit
CAATGGCTGACGGCAGTTGCAGCGAAGCAACGCCAAAAAGCCGGCTTCAC312370.12251671460665396No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC308190.12087724901438898No Hit
CGATCATCAATGGCTGACGGCAGTTACAGCCAAGCAACGCCAGAAAGCCG284530.11159740310219052No Hit
CTGGGAAGCTGTAGGAATATGCAGGCGCAGACACGAGGCCCAGCTTCATC281360.11035407632528144No Hit
CTCAGACCGCGTTCTCTCTCTCTCACTCCCCAATACGGAGAGAAGAACGA279640.10967946368922982No Hit
GTAGGAATATGCAGGCGCAGACACGAGGCCCAGCTTCATCTTCAACGTTG278040.10905191705104225No Hit
CGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAAC270550.10611421435102676No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)