FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28983523
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA9404753.244860881818956No Hit
CACCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAG3403741.1743706933073665No Hit
CACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACG1998360.6894813994834237No Hit
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC1493390.5152548225417594No Hit
CAAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAG878430.30307909773425407No Hit
CACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGGCCGCC783830.27043986336650655No Hit
CACTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCT749820.25870561008059645No Hit
CACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGAC743700.2565940655316471No Hit
CACCAAGACCTACTTCCCGCACTTCGACCTGAGCCACGGCTCTGCCCAGG732630.2527746540681062No Hit
CACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGAC691830.23869769040844344No Hit
CAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGACTC583620.20136268458461729No Hit
CACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGACTCC558180.1925852837144746No Hit
CAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTC529500.18269000631841753No Hit
CAACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGAC512230.1767314484163985No Hit
CACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCC511700.17654858589827055No Hit
CACAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTC443620.15305937790930385No Hit
CACTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACC426920.14729748347017718No Hit
CACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTG421360.145379152147929No Hit
CACCCTGGCCGCCCACCTCCCCGCCGAGTTCACCCCTGCGGTGCACGCCT409650.14133892556815816No Hit
CAGTCAACTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCC398560.1375126136322351No Hit
CACCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGGCCGCCT397260.13706408292739292No Hit
CACCCGGTCAACTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGC379440.13091576203486374No Hit
CAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAA379380.13089506061771716No Hit
CACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTG372000.12834878630868995No Hit
CACCGGTCAACTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCC353990.12213491092852999No Hit
CACGTGGATGAAGTTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTGGTCTA345990.11937472197565493No Hit
CACACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGGCCGCCTG331040.11421661886996967No Hit
CAGGTCAACTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGC328800.11344376596316465No Hit
CACGGTCAACTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCG326590.11268126376493293No Hit
CACCAACGTCAAGGCCGCCTGGGGTAAGGTCGGCGCGCACGCTGGCGAGT317790.10964505591677036No Hit
CACACCTCCCCGCCGAGTTCACCCCTGCGGTGCACGCCTCCCTGGACAAG317720.10962090426343271No Hit
CACGCACGTGGACGACATGCCCAACGCGCTGTCCGCCCTGAGCGACCTGC315270.10877559639661473No Hit
CACCTGGCCGCCCACCTCCCCGCCGAGTTCACCCCTGCGGTGCACGCCTC314760.10859963435086895No Hit
CAGGATGTTCCTGTCCTTCCCCACCACCAAGACCTACTTCCCGCACTTCG293740.10134723787718974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)