FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609624

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609624
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16054843
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC651880.4060332449217971No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA190790.11883641590266564No Hit
GTGGGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGT164830.10266684015533506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)