FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27100682
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGA520280.19198040846352132No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACG384210.14177133992421298No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC333430.12303380409393389No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAAC322810.11911508352446629No Hit
GGGGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCGAAGCAACG277530.10240701691566285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)