FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9471853
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAGGGGAGTGAGCTGACGCTCGGAAGGTGTCTTGAGATTATCATCCGCT137100.14474464500240872No Hit
ATGGTGAATTGGCTTATTTTGTCTGTCCCTGTCTGAATGTATTGCAGGAA130430.13770272828347313No Hit
ATGGGGAATCAGCTTAATGTGTCTGTCCATGTCTGAATTTATTGCAGAAA109450.11555289128748092No Hit
ATGTGGAAGGGGAGTGAGCTGACGCTCGGAAGGTGTCTTGAGATTATCAT106290.11221669086291775No Hit
ATGGGGAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGGGG101750.10742354215167824No Hit
ATGGAAGGGGAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAA98490.10398176576431244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)