FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33542251
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA2196790.6549321928334506No Hit
GACTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT1646550.49088834258619074No Hit
GACTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACC1143810.3410057363174583No Hit
GACATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA887550.26460657038193414No Hit
GACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCC864050.2576004812557154No Hit
GATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC655740.1954967184521993No Hit
GACACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGC589650.17579321077765472No Hit
GACCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGC587940.17528340599442774No Hit
GACACCCGGGAGGTCACTCTCCCCGGGCTCTGTCCAAGTGGCGTAGGGGA569760.16986337619380404No Hit
GAGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGA565120.16848004625569107No Hit
GAGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGT547110.1631106988019379No Hit
GACCGGGAGGTCACTCTCCCCGGGCTCTGTCCAAGTGGCGTAGGGGAGCA533320.1589994660763823No Hit
GAAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAAT476490.1420566556490201No Hit
GAATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC443320.13216763538022536No Hit
GAGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC428010.1276032428473569No Hit
GACAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG404180.1204987703419189No Hit
GACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACG399040.11896637467771617No Hit
GATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAA388600.11585388231696196No Hit
GACCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAG386570.11524867546903754No Hit
GACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGAC379190.11304846535195269No Hit
GACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC360420.10745253799454306No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)