FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11657387
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCC1167211.0012621181745103No Hit
TTGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGT1010720.8670210571202621No Hit
TTCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACC985250.8451722500076561No Hit
TTGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGA845330.7251453520415854No Hit
TTAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAAT753630.6464827838348336No Hit
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA611120.524234118675137No Hit
TTTGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAA551820.4733650860179901No Hit
TTGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAATCACTT491340.42148381965872794No Hit
TTCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGC480510.41219357305372123No Hit
TTCACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAAT433870.3721846070650309No Hit
TTTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTG366630.3145044425478883No Hit
TTGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGAC345720.29656731821633786No Hit
TTCAAAAACATCACCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCC333920.2864449811951855No Hit
TTGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGC321570.27585084032982693No Hit
TTGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAA282180.24206110683294638No Hit
TTCCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAATTAGGGAC264830.2271778401111673No Hit
TTTGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTG238260.20438542531014883No Hit
TTCCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAAATAGGGAC215010.1844409900777936No Hit
TTCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAATTAGGGACC207060.177621279966085No Hit
TTCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGC186770.1602160072407307No Hit
TTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA179900.15432274831400897No Hit
TTCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAG179720.15416833978317782No Hit
TTCCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGC176180.15113163867683213No Hit
TTCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAAATAGGGACC169980.14581312261487073No Hit
TTGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCA166710.14300803430477171No Hit
TTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAG166340.1426906389913966No Hit
TTACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCC164710.14129238396220353No Hit
TTCGGTACCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAATTA154740.1327398670045011No Hit
TTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATG154160.13224232840515632No Hit
TTCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC152390.13072397785198347No Hit
TTCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCG150500.12910268827825652No Hit
TTGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAAC149200.1279875155555872No Hit
TTCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA144220.1237155462025924No Hit
TTGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTT136700.117264700914536No Hit
TTGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAA135250.11602085441617405No Hit
TTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA133640.11463975589040666No Hit
TTCATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAATCA133270.11432236057703155No Hit
TTTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC125080.1072967724242148No Hit
TTCGGTACCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAAATA121280.10403703677333523No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)