FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11087129
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCC815890.7358893361843268No Hit
ATTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC377000.3400339258251618No Hit
ATGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG370840.33447793382759416No Hit
ATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAATCACTT273680.24684478732050472No Hit
ATGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGT265870.23980058318073147No Hit
ATCACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAAT250640.2260639341347972No Hit
ATCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACC245900.22178870652627924No Hit
ATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA244660.2206702925527429No Hit
ATCCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAATTAGGGAC235600.21249865497190482No Hit
ATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGA224280.20228861772962145No Hit
ATAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAAT218500.1970753654981375No Hit
ATTGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAA203320.18338381378984586No Hit
ATGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGG184470.16638211749858778No Hit
ATCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGC177230.1598520230079401No Hit
ATCAAAAACATCACCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCC176100.15883282317721747No Hit
ATCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA170570.15384505763394654No Hit
ATGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGC167570.15113921737539088No Hit
ATCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTT162610.14666556148124552No Hit
ATCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAATTAGGGACC161270.145456952832424No Hit
ATTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTG157470.1420295551715868No Hit
ATCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA150710.13593239512230804No Hit
ATGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGA147790.13329871060398052No Hit
ATCCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGC138680.1250819756854998No Hit
ATGTCCAAGTGGCATAGGGGAGCTTAGGGCTCTGCCCCATGATGTACAGT137210.12375611395880756No Hit
ATCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGC130630.11782130432504212No Hit
ATCGGTACCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAATTA125410.11311314227515527No Hit
ATATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC118220.10662814512215019No Hit
ATCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG117880.10632148322618055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)