FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46520738
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGC669780.14397450014657978No Hit
GAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG644570.13855541156720258No Hit
GACTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT601620.129322969897855No Hit
GACATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA591310.12710675398141794No Hit
GATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC589210.1266553423980505No Hit
GACTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA493080.10599143977466564No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)