FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59913094
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT1442560.2407754138018644No Hit
ATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA1324150.22101178750675105No Hit
ATTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC993970.16590196460226206No Hit
ATCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG694500.11591789934934757No Hit
ATATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC610970.1019760388271719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)