FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7236983
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA275760.3810427632619836No Hit
TATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC259560.3586577445324937No Hit
TACCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGC179670.24826643920539815No Hit
TAATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC128150.1770765524805019No Hit
TAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG121320.16763891804084657No Hit
TATTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACG88170.12183253712216818No Hit
TACAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG81010.11193891156024549No Hit
TACTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA77840.10755863320391938No Hit
TATTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAAC73680.1018103814807911No Hit
TAGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA73460.10150638739927952No Hit
TACTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCT72870.10069113054431661No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)