FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006609727

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609727
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31867527
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA969340.30417798029950677No Hit
ATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA718170.22536107053427773No Hit
ATTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC674880.21177670925014044No Hit
ATGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG433650.13607896213596996No Hit
ATCCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGC420180.1318520888050083No Hit
ATCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAG360550.11314025088925161No Hit
ATATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC347170.10894161947364162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)