FastQCFastQC Report
Sat 4 May 2024
EGAF00006609751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006609751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40816598
Total Bases4 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA3826380.9374568649743911No Hit
ATCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAG1359140.33298708530289567No Hit
ATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA1208340.2960413310291073No Hit
ATTTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC1062140.2602225692596919No Hit
ATCTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCT847920.20773901832778907No Hit
ATCTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACG801520.19637109393585422No Hit
ATCAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC677630.1660182458126471No Hit
ATCAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGAC643170.15757560196467132No Hit
ATCCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGC527080.12913374113148773No Hit
ATATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCAC515600.1263211598379659No Hit
ATCTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGACTCC479840.11756001810831956No Hit
ATGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAG478280.11717782065031486No Hit
ATACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGACTC457060.11197895522796879No Hit
ATCCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGGCCGCC452420.11084216278877529No Hit
ATCACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTG448090.10978131984444171No Hit
ATTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACG433770.1062729431786549No Hit
ATCCCGGTCAACTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGC414190.10147587508395482No Hit
ATGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA413270.10125047658308024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)