FastQCFastQC Report
Tue 9 Aug 2022
EGAF00006620063

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006620063
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23563040
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC11813105.013402345368TruSeq Adapter, Index 2 (100% over 50bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA292970.12433455105962558No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)