FastQCFastQC Report
Tue 9 Aug 2022
EGAF00006620142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006620142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52445681
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC1063340.20275072793887453No Hit
AGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGC923750.17613461821574974No Hit
GGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGC544220.10376831602205717No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)