FastQCFastQC Report
Wed 10 Aug 2022
EGAF00006620222

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006620222
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85371804
Sequences flagged as poor quality0
Sequence length100-102
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC2286300.2678050472027041No Hit
AGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGC1067770.12507291048927582No Hit
GCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCC910630.10666636492769907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)