FastQCFastQC Report
Tue 9 Aug 2022
EGAF00006620225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006620225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72096242
Sequences flagged as poor quality0
Sequence length100-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCACACTAGGTAGAGAGCTTCCACCAGGTGTGAGCCGCACAGGTGTTG853240.1183473612951976No Hit
GTAGAAGAAGCCTCGTTCCCCGCACACTAGGTAGAGAGCTTCCACCAGGT809660.11230266343147262No Hit
CTCAGAATACACCTCTTAAATTTACAGGACTTAACATTTCAAACATCCCA749080.10390000632765296No Hit
GTTCACAAAGGCTGCGGCTGGGTCAGGTCCCCAGAGGGCCAGCAGCGCCA731840.10150875825122758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)