FastQCFastQC Report
Tue 9 Aug 2022
EGAF00006620226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006620226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72096242
Sequences flagged as poor quality0
Sequence length100-102
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCC2982650.4137039486746064No Hit
AGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGC1813120.25148606220002423No Hit
GGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGC1117610.15501640154836363No Hit
CTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCCC953440.1322454504632849No Hit
GCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATGGCC872560.12102711261982282No Hit
CACAGAGCACATCAAAAGTTCCCAAAGAGGGCTTGCTCTCTCTTCACCTG870360.12072196495345763No Hit
CAGGCTGCATCAGAAGAGGCCATCAAGCAGATCACTGTCCTTCTGCCATG832340.1154484584647283No Hit
AGCACATCAAAAGTTCCCAAAGAGGGCTTGCTCTCTCTTCACCTGCTCTG726720.10079859640950495No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)