FastQCFastQC Report
Tue 9 Aug 2022
EGAF00006620249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006620249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61374987
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAAACAGCTCCAACAGGATCAGGAGGGTAATAGACTTACTGTCATGGGA4515810.7357736792677447No Hit
CAGCCCCTTAGCCTCTGATCTTCTCCATAAGTAATCTTTTCCCATGTGTG718820.11711937307620121No Hit
CTCAGAATACACCTCTTAAATTTACAGGACTTAACATTTCAAACATCCCA655850.10685949310262177No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)