FastQCFastQC Report
Thu 1 Sep 2022
EGAF00006623094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006623094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15735
Sequences flagged as poor quality0
Sequence length502-3454
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTACCTTGTTACGACTTCACCCCAGTCATCGACCCCACCGTGGTGATC320720.3813155386082No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCATCGACCCCACCGTGGTGATC193712.310136638068002No Hit
AGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG160010.168414362885288No Hit
AGGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG11967.600889736256752No Hit
AGAGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG7284.626628535112806No Hit
AGGGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG5913.7559580552907534No Hit
GGCTACCTTGTTACGACTTCACCCCAGTCATCGACCCCACCGTGGTGATC4502.8598665395614873No Hit
AGCTACCTTGTTACGACTTCACCCCAGTCATCGACCCCACCGTGGTGATC3242.059103908484271No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC2431.544327931363203No Hit
AGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG1701.0803940260565617No Hit
AGGGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG1560.9914204003813156No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC1480.940578328566889No Hit
AGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG1160.7372100413091833No Hit
AGAGTTCGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG1160.7372100413091833No Hit
AGGGTTCGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG970.6164601207499206No Hit
GGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC940.5973943438195106No Hit
AGGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG860.5465522720050843No Hit
GGTACCTTGTTACGACTTCACCCCAGTCATCGACCCCACCGTGGTGATCG860.5465522720050843No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCATGAATCATACCGTGGTAAAC770.4893549412138544No Hit
AGGGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG730.46393390530664125No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGC670.42580235144582146No Hit
AGAGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG640.40673657451541156No Hit
AGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC610.3876707975850016No Hit
AGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG560.35589450270098505No Hit
AGGGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG540.34318398474737843No Hit
AGAGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG540.34318398474737843No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGC540.34318398474737843No Hit
AGGGTTCGATTCTGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG520.3304734667937718No Hit
AAGTTACCTTGTTACGACTTCACCCCAGTCATCGACCCCACCGTGGTGAT520.3304734667937718No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCATGAATCATACCGTGGTAAAC480.3050524308865586No Hit
AGGTTACCTTGTTACGACTTCACCCCAGTCATCGACCCCACCGTGGTGAT460.29234191293295203No Hit
AAGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACAT440.2796313949793454No Hit
AGAGTTCGATTCTGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG440.2796313949793454No Hit
AGAGTTTGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG420.2669208770257388No Hit
AGGGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG410.26056561804893547No Hit
AGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATGC410.26056561804893547No Hit
GGTTACCTTGTTACGACTTAGCCCCAGTCACCTGTATTACCCTAGGCCGA410.26056561804893547No Hit
AGAGTTTGATTATGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG370.23514458214172226No Hit
GGCTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC360.22878932316491898No Hit
GGTTACCTTGTTACGACTTAGCCCCAGTCACTGGTTTTACCCTAGGCAGC350.22243406418811568No Hit
GGTTACCTTGTTACGACTTCACCCCAATCATCTGTCCCACCGTGACCGGC350.22243406418811568No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTAGCGATAGGCTTAACACATG340.21607880521131237No Hit
AGAGTTTGATTCATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACAT310.19701302828090245No Hit
AAGGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACAT310.19701302828090245No Hit
AGCTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC270.17159199237368922No Hit
AGGGTTTGATTATGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG270.17159199237368922No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTAGCGGCAGGCCTAACACATG270.17159199237368922No Hit
AGGGTTTGATTCATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACAT260.1652367333968859No Hit
AGTTACCTTGTTACGACTTAGCCCCAGTCACCTGTATTACCCTAGGCCGA240.1525262154432793No Hit
AGGGTTTGATTCTGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG240.1525262154432793No Hit
AAGGGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACAT230.14617095646647602No Hit
AGGGTTTGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG230.14617095646647602No Hit
AGAGTTTGATTCTGGCTCAGGATGAACGCTAGCGATAGGCTTAACACATG230.14617095646647602No Hit
AGTTACCTTGTTACGACTTCACCCCAATCATCTGTCCCACCGTGACCGGC230.14617095646647602No Hit
GTTACCTTGTTACGACTTCACCCCAGTCATCGACCCCACCGTGGTGATCG230.14617095646647602No Hit
AGGGTTTGATTCTGGCTCAGGATGAACGCTAGCGATAGGCTTAACACATG230.14617095646647602No Hit
AGGGTTTGATTATGGCTCAGGATGAACGCTAGCGATAGGCTTAACACATG220.1398156974896727No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG210.1334604385128694No Hit
GGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGA190.12074992055926279No Hit
GGTTACCTTGTTACGACTTCACCCCAATCGCTAATCACACCCTCGGAGCA180.11439466158245949No Hit
TAGGTTACCTTGTTACGACTTCACCCCAGTCATCGACCCCACCGTGGTGA180.11439466158245949No Hit
AGTACCTTGTTACGACTTCACCCCAGTCATCGACCCCACCGTGGTGATCG180.11439466158245949No Hit
AGGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATGC180.11439466158245949No Hit
AGAGTTTGATTCTGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG180.11439466158245949No Hit
AAGAGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACAT180.11439466158245949No Hit
GGTTACCTTGTTACGACTTAGCCCCAGTCACTGGTATTACCCTTAAGCGC170.10803940260565618No Hit
GGTTACCTTGTTACGACTTAGCCCCAGTCACTAGTTTTACCCTAAACAGC170.10803940260565618No Hit
AGAGTTCGATCATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG160.10168414362885289No Hit
GGTTACCTTGTTACGACTTAGCCCTAGTTACTTGTTTTACCCTAGGCAGC160.10168414362885289No Hit
AGGGTTTGATTATGGCTCAGGATGAACGCTAGCGGCAGGCCTAACACATG160.10168414362885289No Hit
GGTTACCTTGTTACGACTTAGCCCTAGTTACTCGTTTTACCCTAGGCAGC160.10168414362885289No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)