FastQCFastQC Report
Thu 1 Sep 2022
EGAF00006623099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006623099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12265
Sequences flagged as poor quality0
Sequence length501-4027
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC7205.870362821035466No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC6094.965348552792499No Hit
GGTTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGACGGC4263.4732980024459845No Hit
GGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGA3913.1879331430900937No Hit
AGTTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGACGGC3662.984101100693029No Hit
AGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG3532.878108438646555No Hit
AGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGA3352.7313493681206684No Hit
AGGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG3062.4949041989400733No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG2862.3318385650224216No Hit
AGAGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG2381.940481043620057No Hit
AGGGTTTGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG2371.9323277619241745No Hit
AGGGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG1611.3126783530370973No Hit
AGGGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG1581.2882185079494497No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGC1501.222992254382389No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGC1421.157766000815328No Hit
AGAGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG1381.1251528740317978No Hit
AGGGTTTGATTCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG1140.9294741133306157No Hit
AGAGTTTGATTCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG1070.8724011414594375No Hit
AGGGTTTGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG880.7174887892376681No Hit
AGAGTTTGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG870.7093355075417856No Hit
GGCTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC860.701182225845903No Hit
AGAGTTTGATTATGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG820.6685690990623726No Hit
AGGGTTTGATTATGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG780.6359559722788423No Hit
CGGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAG650.5299633102323685No Hit
CAGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAG570.46473705666530785No Hit
GCGGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAA570.46473705666530785No Hit
AGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC550.4484304932735426No Hit
GGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC520.4239706481858948No Hit
AGCTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC500.40766408479412963No Hit
GGCTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGACGGC460.3750509580105993No Hit
GGCTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGA460.3750509580105993No Hit
CAGAGTTTGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACAT460.3750509580105993No Hit
CGGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCG440.35874439461883406No Hit
AGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG430.3505911129229515No Hit
GGTTACCTTGTTACGACTTAGCCCCAATTACCAGTTTTGCCCTAGGCCGA400.3261312678353037No Hit
CAGTTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGACGG390.31797798613942113No Hit
AGGGTTTGATCATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG380.30982470444353855No Hit
AGAGTTTGATCATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG380.30982470444353855No Hit
CGGTTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGACGG370.30167142274765596No Hit
AGAGTTTGATTCTGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG370.30167142274765596No Hit
AGTTACCTTGTTACGACTTAGCCCCAATTACCAGTTTTGCCCTAGGCCGA370.30167142274765596No Hit
GCAGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAA350.2853648593558908No Hit
CAGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACAT350.2853648593558908No Hit
AGGGTTTGATCATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG340.27721157766000815No Hit
AGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATGC330.26905829596412556No Hit
AGGGTTTGATTCTGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG320.260905014268243No Hit
CAGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCG320.260905014268243No Hit
AGCTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGA300.24459845087647777No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCATGAATCATACCGTGGTAAAC300.24459845087647777No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCATGAATCATACCGTGGTAAAC290.2364451691805952No Hit
AGCTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGACGGC290.2364451691805952No Hit
GCGGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCC290.2364451691805952No Hit
GGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGT270.22013860578883002No Hit
CAGAGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACAT270.22013860578883002No Hit
GGCTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGC250.20383204239706482No Hit
CAGGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACAT250.20383204239706482No Hit
GCGGTTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGACG240.1956787607011822No Hit
AGGGTTTGATCATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG240.1956787607011822No Hit
AGCAGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACAC240.1956787607011822No Hit
AGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGT230.18752547900529964No Hit
GGTTACCTTGTTACGACTTAGCCCCAATCACCGGTTTTACCCTAGGCCGA220.17937219730941703No Hit
CAGGGTTTGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACAT220.17937219730941703No Hit
AGAGTTTGATCATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG210.17121891561353444No Hit
CAGAGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACAT200.16306563391765186No Hit
AGGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG200.16306563391765186No Hit
AGAGTTTGATTCATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACAT200.16306563391765186No Hit
AGGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATGC190.15491235222176927No Hit
AGGGTTTGATTCATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACAT190.15491235222176927No Hit
AGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG190.15491235222176927No Hit
GCAGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACA190.15491235222176927No Hit
CAGAGTTTGATTCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACAT190.15491235222176927No Hit
AGCAGTTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGAC190.15491235222176927No Hit
AGTTACCTTGTTACGACTTAGCCCCAATCACCGGTTTTACCCTAGGCCGA180.14675907052588666No Hit
GGTTACCTTGTTACGACTTAGCCCCAATTACCAGTTTTGCCCTAGGTCGC180.14675907052588666No Hit
AGCGGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGC180.14675907052588666No Hit
AGCGGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTA170.13860578883000407No Hit
GCAGAGTTTGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACA170.13860578883000407No Hit
GCAGTTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGACG170.13860578883000407No Hit
AGAGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACAT170.13860578883000407No Hit
GGTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGCG160.1304525071341215No Hit
AGCAGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTA160.1304525071341215No Hit
AGGTTTGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATGC160.1304525071341215No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATG160.1304525071341215No Hit
AGGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATGC150.12229922543823889No Hit
AGGGTTTGATTATGGCTCAGGATGAACGCTAGCTATAGGCTTAACACATG150.12229922543823889No Hit
GGGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAG150.12229922543823889No Hit
AGAGTTCGATTATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG150.12229922543823889No Hit
GTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGCG150.12229922543823889No Hit
CAGGGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACAT150.12229922543823889No Hit
GGTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGACGGCT140.11414594374235629No Hit
GCAGAGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACA140.11414594374235629No Hit
AGAGTTTGATTCATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACAT140.11414594374235629No Hit
AGCAGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGC140.11414594374235629No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTAGCTATAGGCTTAACACATG140.11414594374235629No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCGCTGATTCCACTGTGGACGGT140.11414594374235629No Hit
AGCAGAGTTTGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACAC140.11414594374235629No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCATCAGTCCTGCCTTCGGCAGC130.1059926620464737No Hit
GCAGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCC130.1059926620464737No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCGCTGATTCCACTGTGGACGGT130.1059926620464737No Hit
AGAGTTCGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG130.1059926620464737No Hit
GCAGGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACA130.1059926620464737No Hit
AGTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGCG130.1059926620464737No Hit
AGTTACCTTGTTACGACTTAGCCCCAATTACCAGTTTTGCCCTAGGTCGC130.1059926620464737No Hit
GGTTACCTTGTTACGACTTAGCCCCAATTCACCAGTTTTGCCCTAGGCCG130.1059926620464737No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)