FastQCFastQC Report
Thu 1 Sep 2022
EGAF00006623103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006623103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6201
Sequences flagged as poor quality0
Sequence length499-5066
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC77812.546363489759715No Hit
GGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC74612.03031769069505No Hit
AGAGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG3135.047572972101274No Hit
AGGGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG2063.322044831478794No Hit
AGCTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC1692.7253668763102725No Hit
GGCTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC1582.547976132881793No Hit
AGAGTTTGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG1342.160941783583293No Hit
AGGGTTTGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG1101.7739074342847927No Hit
AGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGA981.5803902596355426No Hit
GGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGA691.1127237542331883No Hit
AGTTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGACGGC691.1127237542331883No Hit
GGTTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGACGGC661.0643444605708756No Hit
AGGGTTTGATCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG570.9192065795839381No Hit
AGAGTTTGATCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG520.8385744234800839No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC470.7579422673762296No Hit
AGGGTTTGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG470.7579422673762296No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATG470.7579422673762296No Hit
AGAGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG460.7418158361554588No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG430.6934365424931463No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC420.6773101112723754No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCATGAATCATACCGTGGTAAAC350.5644250927269795No Hit
AGAGTTCGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG340.5482986615062087No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCATGAATCATACCGTGGTAAAC340.5482986615062087No Hit
AGAGTTTGATTCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG330.5321722302854378No Hit
AGGGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG320.516045799064667No Hit
AGGGTTCGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG310.4999193678438961No Hit
AGGGTTCGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG290.46766650540235444No Hit
AGGGTTTGATTCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG280.45154007418158365No Hit
AGGGTTTGATTATGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATG270.43541364296081275No Hit
GGTTACCTTGTTACGACTTAGCCCCAATTACCAGTTTTGCCCTAGGCCGA270.43541364296081275No Hit
AGAGTTCGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG260.41928721174004197No Hit
AGTTACCTTGTTACGACTTCGTCCCAATCGCCAATCCCACCTTCGACCAC240.3870343492985002No Hit
AGAGTTTGATTATGGCTCAGGACTGAACGCTGGCGGCGTGCCTAATACAT240.3870343492985002No Hit
AGTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGCT240.3870343492985002No Hit
GGTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGCT230.3709079180777294No Hit
AGGGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG230.3709079180777294No Hit
AGTTACCTTGTTACGACTTAGCCCCAATTACCAGTTTTGCCCTAGGCCGA230.3709079180777294No Hit
AGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG220.35478148685695854No Hit
AGAGTTTGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG210.3386550556361877No Hit
AGTTACCTTGTTACGACTTCACCCCCCTTACCAACCACACCTTCGGCGTC200.32252862441541685No Hit
AGAGTTTGATTCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATG200.32252862441541685No Hit
AGGGTTCGATCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG180.29027576197387517No Hit
AGGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG180.29027576197387517No Hit
AGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG180.29027576197387517No Hit
CGGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGG180.29027576197387517No Hit
AGGGTTTGATTATGGCTCAGGACTGAACGCTGGCGGCGTGCCTAATACAT170.2741493307531043No Hit
AGGGTTTGATTCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT160.2580228995323335No Hit
AGCTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGA160.2580228995323335No Hit
AGGGTTTGATTCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATG150.24189646831156267No Hit
AGAGTTTGATCATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG150.24189646831156267No Hit
GGTTACCTTGTTACGACTTCGTCCCAATCGCCAATCCCACCTTCGACCAC150.24189646831156267No Hit
AGAGTTTGATTCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT150.24189646831156267No Hit
AGAGTTTGATCATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG150.24189646831156267No Hit
GGCTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGA140.22577003709079183No Hit
AGAGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG130.20964360587002098No Hit
AGGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGC120.1935171746492501No Hit
AGGGTTTGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG120.1935171746492501No Hit
AGGGTTTGATCATGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATG120.1935171746492501No Hit
AGTTACCTTGTTACGACTTAGCCCCAATTCACCAGTTTTGCCCTAGGCCG110.17739074342847927No Hit
CAGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGG110.17739074342847927No Hit
AGTTACCTTGTTACGACTTAGCCCCAGTCACCTGTATTACCCTAGGCCGA110.17739074342847927No Hit
AGAGTTTGATTCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT110.17739074342847927No Hit
GGCTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGG100.16126431220770843No Hit
AGGGTTTCGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT100.16126431220770843No Hit
AGAGTTTCGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT100.16126431220770843No Hit
AGAGTTTGATTATGGCTCAGCTCACGTACGTCACACAGAGTTTGATTATG100.16126431220770843No Hit
AGAGGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT100.16126431220770843No Hit
AGCTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC100.16126431220770843No Hit
ACAGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCG100.16126431220770843No Hit
GGTTACCTTGTTACGACTTAGTCCCAATCGCCAATCCCACCTTAGACGGC100.16126431220770843No Hit
AGAGTTCGATCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG90.14513788098693758No Hit
AGGTTTGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGC90.14513788098693758No Hit
AGGGTTCGATTCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATG90.14513788098693758No Hit
AGGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG90.14513788098693758No Hit
AGCTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGACGGC90.14513788098693758No Hit
GGTTACCTTGTTACGACTTCACCCCCCTTACCAACCACACCTTCGGCGTC90.14513788098693758No Hit
AGGGTTCGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG90.14513788098693758No Hit
AGGGTTTGATCATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG90.14513788098693758No Hit
AGCTACCTTGTTACGACTTCGTCCCAATCGCCAATCCCACCTTCGACCAC80.12901144976616674No Hit
AGAGTTTGATTCTGGCTCAGGACTGAACGCTGGCGGCGTGCCTAATACAT80.12901144976616674No Hit
GGCTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC80.12901144976616674No Hit
ACGGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCG80.12901144976616674No Hit
AGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG80.12901144976616674No Hit
GGCTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGACGGC80.12901144976616674No Hit
AGAGTTTGATCATGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATG80.12901144976616674No Hit
CAGAGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT70.11288501854539591No Hit
AGGGTTTGATCATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG70.11288501854539591No Hit
GGTTACCTTGTTACGACTTCACCCCAATCATCTGTCCCACCGTGACCGGC70.11288501854539591No Hit
GGCTACCTTGTTACGACTTCACCCCAGTCATGAATCATACCGTGGTAAAC70.11288501854539591No Hit
AGTTACCTTGTTACGACTTGAGCTGAGCCAGAATCAAACTCTGTGTGACG70.11288501854539591No Hit
AGTTACCTTGTTACGACTTCACCCCAATCATCTGTCCCACCGTGACCGGC70.11288501854539591No Hit
AGAGTTCGATTATGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATG70.11288501854539591No Hit
AGGGTTCGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG70.11288501854539591No Hit
GTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGCT70.11288501854539591No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)