FastQCFastQC Report
Fri 2 Sep 2022
EGAF00006623105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006623105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18719
Sequences flagged as poor quality0
Sequence length504-3129
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC189010.096693199423045No Hit
AGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC13587.254661039585448No Hit
AGAGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG10125.406271702548214No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGC7744.134836262620867No Hit
AGGGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG6383.4083017255195256No Hit
AGAGTTTGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG5252.804636999839735No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGC5152.7512153426999304No Hit
AGGGTTTGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG4452.3772637427212993No Hit
AGAGTTTGATTATGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG3701.9766013141727656No Hit
GGCTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC2901.54922805705433No Hit
AGGGTTTGATTATGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG2541.3569100913510337No Hit
AGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG2241.1966451199316204No Hit
AGAGTTTGATTCTGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG2211.1806186227896789No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCATGAGCCCTACCGTGGTAAGC2061.1004861370799721No Hit
AGCTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC2041.0898018056520113No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCATGAGCCCTACCGTGGTAAGC1911.0203536513702653No Hit
AGGGTTTGATTCTGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG1780.9509054970885197No Hit
AGAGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG1540.8226935199529889No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG1520.812009188525028No Hit
AGAGTTTGATCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG1450.774614028527165No Hit
AGGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG1400.7479031999572626No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC1400.7479031999572626No Hit
GGTTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGACGGC1270.6784550456755168No Hit
AGAGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG1220.6517442171056146No Hit
GGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGA1190.6357177199636733No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC1190.6357177199636733No Hit
GGCTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGC1180.6303755542496928No Hit
AGTTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGACGGC1180.6303755542496928No Hit
AGGGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG1000.5342165713980448No Hit
AGAGTTTGATTCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG970.5181900742561034No Hit
AGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGA900.4807949142582403No Hit
AGAGTTTGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG880.4701105828302794No Hit
AGGGTTTGATCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG850.454084085688338No Hit
AGAGTTCGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG770.41134675997649445No Hit
AGGGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG770.41134675997649445No Hit
AGGGTTTGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG770.41134675997649445No Hit
AGCTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGC690.36860943426465087No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCATCAGTCCTGCCTTCGGCAGC680.36326726855067043No Hit
AGAGTTTGATCATGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG660.35258293712270955No Hit
AGGGTTTGATTCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG620.33121427426678773No Hit
AGGGTTTGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATG590.3151877771248464No Hit
CGGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGG580.309845611410866No Hit
GGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGTCGC530.2831347828409637No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCACCTTCCCCACCTTAGACGGC500.2671082856990224No Hit
GGTTACCTTGTTACGACTTCACCCCAATCACTATCCACACCTTAGATGCT500.2671082856990224No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTGACAGAATGCTTAACACATG480.2564239542710615No Hit
GGCTACCTTGTTACGACTTCACCCCAGTCATGAGCCCTACCGTGGTAAGC470.2510817885570811No Hit
AGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG460.2457396228431006No Hit
AGGGTTCGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG460.2457396228431006No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCACCTTCCCCACCTTAGACGGC450.24039745712912014No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCATCAGTCCTGCCTTCGGCAGC440.2350552914151397No Hit
GGTTACCTTGTTACGACTTAGCCCCAATTACCAGTTTTGCCCTAGGCCGA420.22437095998717882No Hit
GGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGT410.21902879427319835No Hit
AGAGTTTGATTCTGGCTCAGGATGAACGCTGACAGAATGCTTAACACATG380.203002297131257No Hit
AGAGTTCGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG380.203002297131257No Hit
AGTTACCTTGTTACGACTTAGCCCCAATTACCAGTTTTGCCCTAGGCCGA340.18163363427533522No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTGGCGGCGTGCCTAACACATG340.18163363427533522No Hit
AGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG330.17629146856135477No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTAGCTATAGGCTTAACACATG330.17629146856135477No Hit
AGGGTTCGATTATGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG330.17629146856135477No Hit
AGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGTCGC330.17629146856135477No Hit
AGGGTTCGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG320.1709493028473743No Hit
AGCTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC320.1709493028473743No Hit
AGTTACCTTGTTACGACTTCACCCCAATCACTATCCACACCTTAGATGCT320.1709493028473743No Hit
GGTTACCTTGTTACGACTTCACCCCAATCATCGCCCCCACCTTCGACGGC310.16560713713339387No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTTAGC300.16026497141941343No Hit
AGAGTTTGATTATGGCTCAGAGCGAACGCTGGCGGCAGGCCTAACACATG300.16026497141941343No Hit
CAGAGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT290.154922805705433No Hit
GGTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGCT290.154922805705433No Hit
CAGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGG280.14958063999145255No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTGGCGGCGTGCTTAACACATG280.14958063999145255No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCATCGCCCCCGCCTTAGACGGC280.14958063999145255No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGCC280.14958063999145255No Hit
AGGGTTTGATCATGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG280.14958063999145255No Hit
AGGGTTTGATTATGGCTCAGGATGAACGCTGACAGAATGCTTAACACATG280.14958063999145255No Hit
GGCTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC270.1442384742774721No Hit
AGGGTTTGATTATGGCTCAGGATGAACGCTGGCGGCGTGCCTAACACATG270.1442384742774721No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCATCGCCCCCGCCTTAGACGGC270.1442384742774721No Hit
GGTTACCTTGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGT270.1442384742774721No Hit
AGAGTTTGATTCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAACACATG270.1442384742774721No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGCC260.13889630856349164No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTTAGC250.1335541428495112No Hit
AGTTACCTTGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGT250.1335541428495112No Hit
AGAGTTCGATTATGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG250.1335541428495112No Hit
AGGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGC240.12821197713553076No Hit
GGTTACCTTGTTACGACTTAGCCCCAGTCACTAGTTTTACCCTAAACAGC240.12821197713553076No Hit
CGGTTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGG230.1228698114215503No Hit
AGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGT230.1228698114215503No Hit
AGTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGCT230.1228698114215503No Hit
AGGGTTTGATCATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG220.11752764570756985No Hit
AGCTACCTTGTTACGACTTCACCCCAGTCATGAGCCCTACCGTGGTAAGC220.11752764570756985No Hit
AGGGTTTGATTCTGGCTCAGGATGAACGCTGACAGAATGCTTAACACATG220.11752764570756985No Hit
AGTTACCTTGTTACGACTTAGCCCCAATTACCAGTTTCGCTCTAGGCCGA210.11218547999358941No Hit
AGAGTTCGATCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG210.11218547999358941No Hit
GGTTACCTTGTTACGACTTAGCCCCAATTACCAGTTTCGCTCTAGGCCGA210.11218547999358941No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCATGAATCATACCGTGGTAAAC210.11218547999358941No Hit
AGGGTTTGATTATGGCTCAGGATGAACGCTAGCTATAGGCTTAACACATG210.11218547999358941No Hit
GGTTACCTTGTTACGACTTAGCCCCAATCACCGGTTTTACCCTAGGCCGC200.10684331427960896No Hit
GGTTACCTTGTTACGACTTAGCCCCAATCACCGGTTTTGCCCTAGGCCGT200.10684331427960896No Hit
AGGGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG200.10684331427960896No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTAGCGATAGGCTTAACACATG190.1015011485656285No Hit
GGTTACCTTGTTACGACTTAGCCCCAGTCACCGGTATTACCCTAGTGCGC190.1015011485656285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)