FastQCFastQC Report
Thu 1 Sep 2022
EGAF00006623117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006623117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12696
Sequences flagged as poor quality0
Sequence length506-5251
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC11168.790170132325143No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC9737.663831127914304No Hit
AGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG5094.009136735979836No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCATGAATCATACCGTGGTAAAC3782.977315689981096No Hit
AGGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG3622.8512917454316318No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCATGAATCATACCGTGGTAAAC3212.5283553875236295No Hit
AGAGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG2451.9297416509136738No Hit
AGGGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG2341.8431001890359167No Hit
AGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG1921.5122873345935728No Hit
CGGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAG1711.3468809073724008No Hit
AGGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG1551.2208569628229364No Hit
CAGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAG1281.0081915563957151No Hit
GGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTACCCTAGGCCGA1240.9766855702583491No Hit
AGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTACCCTAGGCCGA1200.945179584120983No Hit
GGCTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC1090.8585381222432261No Hit
AGGGTTTGATCATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG1070.8427851291745432No Hit
GGTTACCTTGTTACGACTTAGCCCCAGTCACTAGTTTTACCCTAAACAGC1030.8112791430371771No Hit
AGTTACCTTGTTACGACTTAGCCCCAGTCACTAGTTTTACCCTAAACAGC950.7482671707624449No Hit
TCGGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAA930.7325141776937618No Hit
AGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG870.6852551984877127No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG840.6616257088846881No Hit
AGAGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG770.6064902331442974No Hit
TCAGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAA730.5749842470069313No Hit
AGGGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG730.5749842470069313No Hit
AGCTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGC700.5513547574039068No Hit
CAGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACAT680.5356017643352238No Hit
AGGGTTTGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG600.4725897920604915No Hit
CGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCATACCGTGGTAAA550.4332073093887839No Hit
GGTTACCTTGTTACGACTTAGCCCCAGTCACCTGTATTACCCTAGGCCGA520.40957781978575925No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGC510.4017013232514178No Hit
CAGTTACCTTGTTACGACTTCACCCCAGTCATGAATCATACCGTGGTAAA490.3859483301827347No Hit
AGAGTTTGATTCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG470.37019533711405167No Hit
AGTTACCTTGTTACGACTTAGCCCCAGTCACCTGTATTACCCTAGGCCGA460.36231884057971014No Hit
AGAGTTTGATTCATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACAT420.33081285444234404No Hit
AGTTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGC420.33081285444234404No Hit
AGAGTTCGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG420.33081285444234404No Hit
GGCTACCTTGTTACGACTTCACCCCAGTCATGAATCATACCGTGGTAAAC410.3229363579080025No Hit
CAGGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACAT410.3229363579080025No Hit
AGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATGC390.30718336483931946No Hit
AGGGTTTGATTATGGCTCAGGATGAACGCTAGCGGCAGGCCTAACACATG390.30718336483931946No Hit
TCAGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACA380.29930686830497794No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTAGCGGCAGGCCTAACACATG380.29930686830497794No Hit
AGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG370.29143037177063646No Hit
AGGGTTTGATTCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG360.28355387523629494No Hit
GGTTACCTTGTTACGACTTCACCCCAATCGCTAATCACACCCTCGGAGCA340.2678008821676119No Hit
TCGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCATACCGTGGTAA340.2678008821676119No Hit
AGGGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG340.2678008821676119No Hit
AGGGTTCGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG330.2599243856332703No Hit
AGGGTTTGATTATGGCTCAGGATGAACGCTAGCGATAGGCTTAACACATG320.2520478890989288No Hit
CAGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACAT320.2520478890989288No Hit
AGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG320.2520478890989288No Hit
GTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGCG320.2520478890989288No Hit
CAGAGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACAT310.24417139256458728No Hit
AGGGTTCGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG310.24417139256458728No Hit
AGTTACCTTGTTACGACTTCACCCCAATCGCTAATCACACCCTCGGAGCA300.23629489603024575No Hit
CAGGGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACAT290.22841839949590423No Hit
GGTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAGCG280.2205419029615627No Hit
AGAGTTTGATTCTGGCTCAGGATGAACGCTAGCGGCAGGCCTAACACATG280.2205419029615627No Hit
AGAGTTTGATTATGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG280.2205419029615627No Hit
AGGGTTTGATTATGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG270.21266540642722118No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTAGCGATAGGCTTAACACATG260.20478890989287962No Hit
AGGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATGC250.1969124133585381No Hit
AGGGTTTGATTCATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACAT250.1969124133585381No Hit
AGCTACCTTGTTACGACTTCACCCCAGTCATGAATCATACCGTGGTAAAC240.1890359168241966No Hit
CTCGGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTA230.18115942028985507No Hit
CGGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTACCCTAGGCCG230.18115942028985507No Hit
CTCAGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTA230.18115942028985507No Hit
AGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC220.17328292375551355No Hit
AGGGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG220.17328292375551355No Hit
TCAGGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACA220.17328292375551355No Hit
GGCTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTACCCTAGGCCGA210.16540642722117202No Hit
AGAGTTCGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG210.16540642722117202No Hit
GGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC200.1575299306868305No Hit
TCTCAGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGT190.14965343415248897No Hit
AGAGTTTGATTCTGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG190.14965343415248897No Hit
AGGGTTTGATTCTGGCTCAGGATGAACGCTAGCGATAGGCTTAACACATG190.14965343415248897No Hit
AGGGTTTGATTCTGGCTCAGGATGAACGCTAGCGGCAGGCCTAACACATG190.14965343415248897No Hit
AGGGTTCGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATG190.14965343415248897No Hit
CAGTTACCTTGTTACGACTTAGCCCCAGTCACTAGTTTTACCCTAAACAG180.14177693761814747No Hit
TCAGTTACCTTGTTACGACTTCACCCCAGTCATGAATCATACCGTGGTAA180.14177693761814747No Hit
CAGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTACCCTAGGCCG180.14177693761814747No Hit
TCAGAGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACA170.13390044108380594No Hit
GGTTACCTTGTTACGACTTCACCCCAATCATCGACTTTACCTTAGACGGC160.1260239445494644No Hit
AGGGTTCGATTATGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATG160.1260239445494644No Hit
AGAGTTTGATTATGGCTCAGGATGAACGCTGACAGAATGCTTAACACATG150.11814744801512288No Hit
TCAGAGTTTGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACA150.11814744801512288No Hit
CGGTTACCTTGTTACGACTTAGCCCCAGTCACTAGTTTTACCCTAAACAG140.11027095148078135No Hit
GGTTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAAG140.11027095148078135No Hit
TCAGGGTTTGATTCTGGCTCAGATTGAACGCTGGCGGCATGCTTTACACA140.11027095148078135No Hit
GGTTACCTTGTTACGACTTAGCCCCAATCACCGGTTTTACCCTAGGCCGA130.10239445494643981No Hit
AGTTACCTTGTTACGACTTAGCCCCAATCACCGGTTTTACCCTAGGCCGA130.10239445494643981No Hit
TCAGGGTTTGATTATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACA130.10239445494643981No Hit
CAGCTACCTTGTTACGACTTCACCCCAGTCATGAAGCATACCGTGGTAAG130.10239445494643981No Hit
AGGGTTCGATCATGGCTCAGATTGAACGCTGGCGGCATGCTTTACACATG130.10239445494643981No Hit
AGGGTTTGATTCTGGCTCAGAACGAACGCTGGCGGCAGGCTTAACACATG130.10239445494643981No Hit
CGGTTACCTTGTTACGACTTAGCCCCAGTCACCTGTATTACCCTAGGCCG130.10239445494643981No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)