FastQCFastQC Report
Thu 1 Sep 2022
EGAF00006623135

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006623135
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16970
Sequences flagged as poor quality0
Sequence length503-4816
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC317618.715380082498527No Hit
GGCTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC210412.39835002946376No Hit
AGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC8735.1443724219210365No Hit
AGCTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGC6763.983500294637596No Hit
AGGGTTCGATCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG6763.983500294637596No Hit
AGGGTTCGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG6223.6652916912198No Hit
AGGGTTTGATCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG5113.011196228638774No Hit
GGTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGCT4662.7460223924572773No Hit
AGAGTTCGATCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG4332.551561579257513No Hit
AGGGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG4242.498526812021214No Hit
AGAGTTCGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG3952.327637006482027No Hit
AGGGTTCGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG3762.215674720094284No Hit
AGAGTTTGATCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG3351.9740718915733646No Hit
AGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG2741.614614024749558No Hit
AGAGTTCGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG2721.6028285209192694No Hit
AGGGTTCGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG2181.2846199175014732No Hit
AGGGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG1701.0017678255745435No Hit
AGAGTTTGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG1540.9074837949322333No Hit
AGAGTTCGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG1530.901591043017089No Hit
AGGGTTCGATTCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT880.5185621685327048No Hit
AGGGTTTCGATCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT810.4773129051266941No Hit
AGGGTTCGATTCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT690.4065998821449617No Hit
AGAGTTCGATTCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT680.40070713022981735No Hit
GTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGCT600.3535651149086624No Hit
AGTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGCT590.34767236299351795No Hit
GGCTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGG510.300530347672363No Hit
AGGGTTTGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG510.300530347672363No Hit
AGGGTTTCGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT510.300530347672363No Hit
AGAGTTTGATTCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATG470.2769593400117855No Hit
AGAGTTCGATTCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT470.2769593400117855No Hit
AGAGTTTCGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT440.2592810842663524No Hit
AGGTTCGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGC430.253388332351208No Hit
AGAGTTTCGATCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT370.21803182086034176No Hit
AGGTTTGATCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGC340.20035356511490868No Hit
AGGTTCGATCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGC320.18856806128461992No Hit
AGGGTTCGATCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGC310.18267530936947554No Hit
GGGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGG290.1708898055391868No Hit
GCTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGCT290.1708898055391868No Hit
GGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGA280.16499705362404243No Hit
AGGGTTTCGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT270.15910430170889805No Hit
AGGTTCGATTATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGC260.15321154979375368No Hit
AGGGTTTGATTCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT230.13553329404832057No Hit
AGGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGC220.1296405421331762No Hit
TGGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGG220.1296405421331762No Hit
TGGCTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGG210.12374779021803181No Hit
AGAGTTCGATCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGC210.12374779021803181No Hit
AGGGTTCGATATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGC190.11196228638774308No Hit
TAGTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGG180.1060695344725987No Hit
AGTTACCTTGTTACGACTTAGCCCCAATCACCAGTTTTGCCCTAGGCCGA180.1060695344725987No Hit
GGTTTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGG170.10017678255745434No Hit
AGAGGTTTGATCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACAT170.10017678255745434No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)