FastQCFastQC Report
Tue 9 Aug 2022
EGAF00006623164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006623164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165786593
Sequences flagged as poor quality0
Sequence length25-51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATC3620970.21841150930702824No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCG1868270.11269125966054444No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGC1807250.10901062427888847No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)