FastQCFastQC Report
Tue 9 Aug 2022
EGAF00006623397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006623397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences156480148
Sequences flagged as poor quality0
Sequence length25-51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC2143540.1369847886391314No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTG1668650.10663653002168684No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGC1580240.10098661205253973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)