FastQCFastQC Report
Wed 10 Aug 2022
EGAF00006623489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006623489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences199843125
Sequences flagged as poor quality0
Sequence length25-51
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG2848370.14253029720186772TruSeq Adapter, Index 3 (97% over 36bp)
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT2333800.11678160056794548No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG2202990.11023596633609486No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)