FastQCFastQC Report
Wed 16 Nov 2022
EGAF00006627109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006627109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40782443
Sequences flagged as poor quality0
Sequence length126
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC1538140.37715739589214897TruSeq Adapter, Index 1 (100% over 50bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1083510.2656805037402983No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATG644820.15811215625312097TruSeq Adapter, Index 1 (100% over 49bp)
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG538010.13192196455715025No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)