FastQCFastQC Report
Wed 16 Nov 2022
EGAF00006627154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006627154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16907840
Sequences flagged as poor quality0
Sequence length150
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTGGTAGCTGTGTAGATC1661250.9825323636845393Illumina Single End PCR Primer 1 (97% over 35bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1616270.9559293203626246No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA195490.11562091905293638No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)