FastQCFastQC Report
Wed 16 Nov 2022
EGAF00006627276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006627276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences152498029
Sequences flagged as poor quality0
Sequence length126
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA18720481.2275883250923854No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2966980.19455858016368197No Hit
CGAAAATGGAAAGATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAA2284290.14979144418974755No Hit
AAAAAAGACAAGCTAGGAAACAAAAAGCTAAGGGCAAAATGTACAAACTT2090610.13709095217224085No Hit
CAACAACCCTCTTAAAACTAATTGGCTTTTTAGAAACACCCCACAAAAGC1668140.10938764329865537No Hit
AAAGAATAGAGAAGATAGGGAAATTAGAAGATAAAAACATACTTTTAGAA1613190.10578431803862855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)