FastQCFastQC Report
Wed 16 Nov 2022
EGAF00006627330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006627330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139120393
Sequences flagged as poor quality0
Sequence length126
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG12147970.8731983671150211Illumina Single End PCR Primer 1 (100% over 50bp)
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCT3565930.2563197187057975No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2424230.17425410809470612No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC2080010.14951150978994143Illumina Single End PCR Primer 1 (100% over 50bp)
TTTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAG2044550.1469626383243469No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGA1535690.1103856858713733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)