FastQCFastQC Report
Wed 16 Nov 2022
EGAF00006627375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006627375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130340304
Sequences flagged as poor quality0
Sequence length126
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGC4414580.3386964633748284TruSeq Adapter, Index 10 (100% over 50bp)
CTGGGATGTCCGCTGCAATCTGCTCCGGGGCTGCAGCAACCTCATCAGCT3088360.236945895108546No Hit
GCAGGTTCCATAGCGACGTTCTCCTGCAATGCACGCTGGTATTCTGCAAT2760140.2117641217101964No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2457780.18856638542135057No Hit
GCTGGTATTCTGCAATAGCAGGCCATGTTTTTCCTTGAGCCTGGATGCTT1420050.10894941598417632No Hit
GCCCAGAGTCTTCCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGC1350660.10362565979591394No Hit
GAGGAAAGGAAATTGAGCAGAAGGTACAGGAGTAATAGCAATTCCCTGTA1337080.10258377178558675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)