FastQCFastQC Report
Wed 16 Nov 2022
EGAF00006627429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006627429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124048394
Sequences flagged as poor quality0
Sequence length126
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10111290.8151084970918688No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC5403490.43559532096804093TruSeq Adapter, Index 4 (100% over 50bp)
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG1243350.10023104370057381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)