FastQCFastQC Report
Wed 16 Nov 2022
EGAF00006627430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006627430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124048394
Sequences flagged as poor quality0
Sequence length126
%GC45

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11078360.8930675877996455No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG4622230.37261506182820875Illumina Single End PCR Primer 1 (100% over 50bp)
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC2709000.21838251287638596No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT1908560.15385608297355305No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1404430.11321629847138528No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC1309210.10554026197227512No Hit
CGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT1299530.1047599213577888No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)