FastQCFastQC Report
Wed 16 Nov 2022
EGAF00006627477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006627477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences182364578
Sequences flagged as poor quality0
Sequence length126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTC2249470.12335016068745544No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGC2069320.11347159753798242TruSeq Adapter, Index 7 (100% over 50bp)
CGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCC2050510.11244014723078513No Hit
GGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAG1857210.10184050106485044No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)