FastQCFastQC Report
Wed 16 Nov 2022
EGAF00006627498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006627498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80148721
Sequences flagged as poor quality0
Sequence length126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAAAATGGAAAGATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAA2923760.3647918473957931No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG2483920.3099138662487203Illumina Single End PCR Primer 1 (100% over 50bp)
GGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACTGGAAGA1673930.20885298968151966No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1281670.15991147257359228No Hit
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC1136160.14175647294483962No Hit
GAAAGATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAG905310.11295376753423178No Hit
GATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTG888390.11084269204994548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)