FastQCFastQC Report
Wed 16 Nov 2022
EGAF00006627502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006627502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87471060
Sequences flagged as poor quality0
Sequence length126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG2277840.2604107004076548Illumina Single End PCR Primer 1 (100% over 50bp)
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC1003160.11468478831741606No Hit
CGAAAATGGAAAGATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAA972000.11112246724802467No Hit
GGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACTGGAAGA890090.10175822723538505No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)