FastQCFastQC Report
Wed 16 Nov 2022
EGAF00006627526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006627526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88213114
Sequences flagged as poor quality0
Sequence length126
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTACGGGTCTGCGAGAGCGCCAGCTATCCTGAGGGAAACTTCGGAGGG2836510.3215519633509367No Hit
GTATCAACGCAGAGTACGGGGCTCGCCGGCCGAGGTGGGATCCCGAGGCC2419380.27426534335926517No Hit
GTATCAACGCAGAGTCGGGTCTGCGAGAGCGCCAGCTATCCTGAGGGAAA2081610.2359751181666708No Hit
CCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAAT1517970.1720798565165719No Hit
CCTATACCCAGGTCGGACGACCGATTTGCACGTCAGGACCGCTACGGACC1498740.16989990853287415No Hit
CTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAGGTCGGACGAC1475180.1672291038268981No Hit
TATCAACGCAGAGTACGGGGCTCGCCGGCCGAGGTGGGATCCCGAGGCCT1275410.14458281112261834No Hit
ACGCAGAGTCGGGTCTGCGAGAGCGCCAGCTATCCTGAGGGAAACTTCGG1242770.14088268100364307No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG1215440.137784502199979No Hit
TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGA1174380.1331298654755573No Hit
TATCAACGCAGAGTCGGGTCTGCGAGAGCGCCAGCTATCCTGAGGGAAAC1082520.12271644780616178No Hit
CCCCTATACCCAGGTCGGACGACCGATTTGCACGTCAGGACCGCTACGGA1069810.12127561895162207No Hit
AATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTT1020320.11566534200345767No Hit
GTATCAACGCAGAGTACGGGTCTGCGAGAGCGCCAGCTATCCTGAGGGAA1005420.11397625074203818No Hit
GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCC960700.10890670972118727No Hit
TCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCACCCACT946850.10733664838087453No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)