FastQCFastQC Report
Fri 24 May 2024
EGAF00006692738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006692738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57462968
Total Bases7.2 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGATAAACTTCGCCTTAATTTT835350.14537188542018922Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ATTTTTTGTAGCCACAGGCTTCCACGGACTTCACGTCATTATTGGCTCAA677810.11795596774604472No Hit
CTCTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCAC586680.10209705840464071No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)