FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006712216

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006712216
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44088254
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAGTGCT1400360231.762659505636126No Hit
CTGCAAGC1161302026.34039442795807No Hit
GCTACCTG1014091723.001403049438064No Hit
TGCTGTAA781610317.7283114908565No Hit
GCTACCTA734010.1664865204233309No Hit
AAAGTGCA733660.1664071341995081No Hit
TGCTCTAA478800.10860035418957621No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)