FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006712221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006712221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1824434
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAGTGCT53976529.585339891714362No Hit
CTGCAAGC47618626.100478285320268No Hit
GCTACCTG44881824.600396616156026No Hit
TGCTGTAA30969116.974634324946805No Hit
AAAGTGCA34170.18729096256702077No Hit
GCTACCTA32500.17813743878923546No Hit
TGCTCTAA26410.1447572233361141No Hit
CTGCAAGA21680.11883137455232691No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)