FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006712236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006712236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1771038
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCACCA54975831.041569971959948No Hit
ACTGTGGC52014129.36927383828015No Hit
GGGTCAAG34860219.683485052268782No Hit
CTAAGTTT29253316.51760154214647No Hit
TACCCCCA76020.4292398017433844No Hit
TACCACAA34400.19423637437480165No Hit
CTAAGTTA30630.17294942288081905No Hit
ACTGTGGA26230.14810523546078627No Hit
TACAACCA25970.14663716984051162No Hit
TAACACCA24160.13641717456090724No Hit
CCTGTGGC23320.1316741933261737No Hit
TCCCACCA19270.1088062480872799No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)