FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006712250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006712250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2035775
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTGGCG53517626.28856332355No Hit
GGTAACGC50359724.737360464687896No Hit
TTGGCATA46611822.896341688054918No Hit
CCACTTAT45826322.510493546683698No Hit
GGTAACGA40820.2005133180238484No Hit
CCACTTAA32560.15993908953592612No Hit
AACTGGCT32220.15826896390809397No Hit
CAACTTAT24760.12162444277977674No Hit
TTGGAATA24580.12074025862386562No Hit
GGTAACTC23340.11464921221647775No Hit
AAATGGCG22140.10875465117707016No Hit
AACTGGAG21010.10320393953162801No Hit
GGTACCGC20410.1002566590119242No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)