FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006712253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006712253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1697608
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTGGCG42959425.30584210253486No Hit
GGTAACGC40881924.082061347496005No Hit
TTGGCATA38076022.429206271412482No Hit
CCACTTAT37260221.948647744355586No Hit
GGTAACGA72700.4282496312458471No Hit
AACTGGCT67990.40050471015687955No Hit
TTGGAATA47370.27903968407311935No Hit
GGTAACTC45620.26873106158783416No Hit
CAACTTAT40180.2366859722621477No Hit
AAATGGCG39960.23539003114971183No Hit
CCACTTAA39140.23055970518517818No Hit
CCAATTAT38830.22873360634492768No Hit
AACTGGAG38710.22802672937450816No Hit
GGTAAAGC37450.2206045211851028No Hit
AACTGTCG36280.21371247072351213No Hit
TTTGCATA32500.19144584615529617No Hit
AACTTGCG32490.19138693974109453No Hit
ACACTTAT30970.18243316478244684No Hit
GTTAACGC29840.1757767399776627No Hit
TTGTCATA26920.15857606703078686No Hit
GGTACCGC24860.14644134570525116No Hit
TTGGCAAA23920.14090414277029797No Hit
TGTAACGC20750.1222308094683814No Hit
AACTGGCC20720.1220540902257765No Hit
CCCCTTAT18940.11156874849788644No Hit
TAGGCATA18300.10779873798898215No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)