FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006712256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006712256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1973107
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTGGCG49612125.144150824055668No Hit
GGTAACGC47124323.883296749745455No Hit
TTGGCATA44048822.324587566715845No Hit
CCACTTAT43230321.909759582222353No Hit
GGTAACGA84230.4268901787890874No Hit
AACTGGCT77910.3948594779705308No Hit
TTGGAATA56450.2860970033556214No Hit
GGTAACTC53740.27236231993500604No Hit
AAATGGCG49150.24909951665064287No Hit
CAACTTAT48340.24499431607104935No Hit
CCACTTAA47670.24159865633237324No Hit
AACTGGAG47540.24093979698009282No Hit
GGTAAAGC46240.23435120345728844No Hit
AACTGTCG45490.23055009180951666No Hit
CCAATTAT45200.22908032863904493No Hit
ACACTTAT40670.20612161428650347No Hit
AACTTGCG38180.1935019236159012No Hit
TTTGCATA38090.19304579021816862No Hit
GGTACCGC37330.18919399708175988No Hit
GTTAACGC36340.18417652970670115No Hit
TTGTCATA32300.1637012082973706No Hit
TTGGCAAA29880.15143628804722703No Hit
CCCCTTAT29710.15057470274039877No Hit
AACTGGCC27480.1392727307743574No Hit
TGTAACGC25030.12685576605830298No Hit
TAGGCATA23560.11940558722867033No Hit
ACCTGGCG21690.10992814885355938No Hit
CCACATAT19990.10131229578527672No Hit
CCACTAAT19850.10060275494435933No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)