FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006712261

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006712261
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1559469
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTCCTC41247426.44964407756743ABI Solid3 Adapter A (100% over 8bp)
CCGGGTAT36883623.651383900545632No Hit
ATCATGCA35644122.85656207337241No Hit
TAACAAGG35223322.586726635797184No Hit
GGTTCCTA64850.4158466760160029No Hit
GGTTACTC48630.3118369137187081No Hit
ATAATGCA39310.2520729812519518No Hit
ATCATGAA26670.17101975095369No Hit
TAACAAGT25130.1611445947306423No Hit
GGTTCATC23810.1526801751108871No Hit
ATCATTCA20090.1288259016370316No Hit
TAACAATG19860.1273510406426803No Hit
TAAAAAGG17620.11298717704551998No Hit
CCGGGTAA16660.10683123550387984No Hit
CAGGGTAT16610.1065106135485861No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)