FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006712264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006712264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1793468
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTCCTC47013326.21362633735311ABI Solid3 Adapter A (100% over 8bp)
CCGGGTAT42078423.46202998882612No Hit
ATCATGCA40590022.63212948321353No Hit
TAACAAGG40465922.56293393581597No Hit
GGTTCCTA76610.4271612317588047No Hit
GGTTACTC60020.3346588843514353No Hit
ATAATGCA47550.2651287895853174No Hit
ATCATGAA33890.18896350534272147No Hit
TAACAAGT31080.1732955369150718No Hit
GGTTCATC29470.16431851585866042No Hit
TAACAATG26170.14591841058775512No Hit
ATCATTCA24840.13850261058463267No Hit
TAAAAAGG23680.13203469479243565No Hit
CAGGGTAT21760.1213291789984544No Hit
GGGTCCTC21390.11926613689232257No Hit
ACGGGTAT20830.11614369478574471No Hit
CCGGGTAA20350.11346731583724941No Hit
GGTTCCGC19750.11012184215163025No Hit
ATCCTGCA19610.10934123162498578No Hit
ATCATGCC18360.10237149477994589No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)