FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006712267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006712267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences162955538
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGGAAC4490274727.55521386453279No Hit
TTTCATGA4170024325.589951413618113No Hit
ACGTCCCT3865479523.721068626707243No Hit
CGCATGTG3552430621.799999212055006No Hit
CGCATGTA3508290.215291240976419No Hit
ACGTCCCA2207960.13549462798864803No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)