FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences167170017
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATGATTC4437896126.547201344126204No Hit
CCCACAGT4290803125.667300733719493No Hit
GGATGCCG4203316025.14395868010231No Hit
ATGCTGAA3580457521.418060273332387No Hit
ATGCTAAA3598280.2152467329114407No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)